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◇ arXiv2026-08-19· physics.chem-ph

UBio-MolFM: Enabling Biomolecular Dynamics at DFT Accuracy and $10^5$ Atoms with One Untuned Potential

Lin Huang, Frank Peng, JiaJun Cheng, Zion Wang, Hao Yin, Hao Li, Ji Zhang, Jack Jia, Junping Zhao, Arthur Jiang, Jia Zhang

原始摘要(英文原文)· Original abstract
Ion conduction, membrane permeation and metal recognition hinge on electronic structure, yet first-principles simulation reaches only hundreds of atoms. UBio-MolFM lifts that ceiling: a foundation model trained on 160 million quantum-chemical labels, its receptive field spanning non-covalent distances at near-linear cost. The barrier is cost, not principle. One untuned potential keeps force error near 20 meV/Å past a thousand atoms, reproduces water's X-ray structure and ion hydration, and holds an RNA Mg$^{2+}$ site without ion-specific parameters. Cyclosporine A pays 3.5 kcal/mol in water for its permeable conformer, gated by one kinetically asymmetric hydrogen bond that a fixed-charge model flattens. In a 108,964-atom KcsA channel on one GPU, the relaxed four-ion column is anhydrous in all five replicas, in direct contact in four---the knock-on geometry ten fixed-charge simulations never form. It remains orders of magnitude costlier. Where electronic structure decides the answer, first-principles simulation is in reach.
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UBio-MolFM: Enabling Biomolecular Dynamics at DFT Accuracy and $10^5$ Atoms with One Untuned Potential — 科研速览 Science Skim