Replication Data for: A scoping review of antimalarial drug resistance markers in Kenya (1987–2022): toward a National Surveillance Framework and Data Repository

This replication package contains all data, scripts, and outputs used in the study "A scoping review of antimalarial drug resistance markers in Kenya (1987–2022): toward a National Surveillance Framework and Data Repository." The repository provides a reproducible workflow for the identification, extraction, standardization, analysis, and visualization of published molecular surveillance data on Plasmodium falciparum antimalarial drug resistance in Kenya. The package includes: 01-scripts R scripts used for data cleaning, harmonization, analysis, mapping, and figure generation. 02-search terms Search strategies used across bibliographic databases. 03-studies Bibliographic records and retrieved studies from PubMed, Embase, Scopus, Web of Science, and Google Scholar. 04-extracted-data Curated datasets containing allele frequencies, microhaplotype frequencies, and mapping information extracted from eligible studies. 05-output Reproducible analytical outputs, including tables, figures, maps, and summary datasets presented in the publication. 06-mapping Geographic reference files and shapefiles used to generate spatial visualizations. The repository aggregates data from 110 published studies and serves as a reproducible resource for malaria molecular surveillance, resistance monitoring, and future development of a national antimalarial drug resistance data repository for Kenya. Directory structure: 01-scripts 02-search terms 03-studies embase google-scholar pubmed scopus web-of-science 04-extracted-data genotypes-alleles genotypes-microhaplotypes crt dhfr dhfr-dhps dhps mdr1 mapping 05-output alleles datapoints graphs maps microhaplotypes tables alleles datapoints haplotypes 06-mapping 01-shapefiles ken_adm_iebc_20191031_shp ken_lakes kenya-sublocations