Bolormaa Baljinnyam, Michael Ronzetti, Adam Yasgar, Anton Simeonov
Differential scanning fluorimetry (DSF) is an efficient and high-throughput method to analyze protein stability, as well as detect ligand interactions through perturbations of the protein's melting temperature. This method monitors protein unfolding by observing the fluorescence changes of a sample, whether through an environmentally sensitive fluorophore or by intrinsic protein fluorescence, while a temperature gradient is applied. Here, we describe in detail how to develop and optimize DSF assays to identify protein-ligand interactions, while exploring different buffer and additive conditions. Analysis of the data and further applications of the method are also discussed.