Xin Li, Jinyuan Wu, Lin Zheng, Sining Tao, Wenjing Jin, Xiaolei Zhao, Steven De Jonghe, Leentje Persoons, Dirk Daelemans, Xinyong Liu, Yuanhui Fu, Dongwei Kang, Ni Gao
Respiratory syncytial virus (RSV) is an RNA virus that infects both the upper and lower respiratory tract and is recognized as a major respiratory health threat. In this study, guided by the cryo-EM structure of the MRK-1-RSV polymerase complex, the substituent region at the C4 position of the shared pyridine core was redesigned. A series of 32 pyridine carbohydrazide derivatives bearing structurally diverse N-substituted amino groups was synthesized to explore the structure-activity relationship and substituent tolerance of the adjacent pocket region. LX1 was selected as a representative compound for further investigation and exhibited potent activity against RSV-A Long strain, with an EC50 value of 37 nM. Minigenome assays showed that LX1 reduces polymerase-dependent reporter activity, consistent with inhibiting RSV RNA synthesis. Furthermore, molecular dynamics simulations revealed that LX1 forms stable hydrogen bonds and π-π stacking interactions with key amino acids in the PRNTase domain. Collectively, LX1 represents a promising lead compound for the further development of novel RSV inhibitors.