Le Xing, Dan He, Dong-Mei Li, Zhong Liang, Chen Yue, Cheng-Yang Zhang, Ying-Chen Hou, Chen-Yu Jiang, Guang-Ding Zhou, Hongjiao Yu, Yan-Ling Zhang, Yan-Xia Shi, Lin-Hai Li, Ming Liu
CD8+ T-cell states are associated with tumor immune characteristics and clinical outcomes in HCC. This single-cell-derived T cell plasticity scoring system provides a quantitative framework for prognostic prediction and immune landscape evaluation, with potential implications for clinical decision-making.
BACKGROUND: T cells play a central role in antitumor immunity. Emerging evidence indicates that T-cell plasticity and differentiation states are associated with clinical outcomes and responses to cancer immunotherapy. CD8⁺ T cells that retain differentiation potential are thought to sustain effective antitumor immunity. However, robust quantitative metrics for assessing tumor-infiltrating CD8+ T-cell state plasticity and defining its clinical significance in hepatocellular carcinoma remain lacking.
METHODS: We integrated publicly available single-cell RNA-sequencing datasets from HCC cohorts to characterize CD8⁺ T-cell states using unsupervised pseudotime reconstruction and supervised ordinal transcriptional modeling. We used genes showing progressive changes along the inferred state axis and enriched in CD8⁺ T cells to develop a T-cell State Plasticity score using Cox proportional hazards and LASSO regression in the training cohort. The model was evaluated in independent bulk transcriptomic cohorts.
RESULTS: Supervised psupertime analysis validated the predefined Tcm-Tem-Tpex-Ttex ordinal axis in held-out cells, supporting the existence of an ordered CD8⁺ T-cell state continuum in HCC. The CD8+ T-cell State Plasticity score robustly stratified clinical outcomes across multiple large HCC cohorts. High-risk scores, indicative of reduced CD8+ T-cell state plasticity, were associated with adverse clinical outcomes and an immunosuppressive tumor immune microenvironment.
CONCLUSION: CD8+ T-cell states are associated with tumor immune characteristics and clinical outcomes in HCC. This single-cell-derived T cell plasticity scoring system provides a quantitative framework for prognostic prediction and immune landscape evaluation, with potential implications for clinical decision-making.